micca
1.6.2
Getting Started
Install
Run micca in 6 steps
Supported databases
Tutorials
Single-end sequencing
Paired-end sequencing
Import and analyze the data into R and phyloseq
Compute basic OTU table statistics, rarefy and summarize OTU tables by taxa using micca
Picking OTUs for use in PICRUSt
In Depth
Quality filtering strategy in micca
OTU picking in micca
Supported file formats
Changes
Command reference
classify
convert
filter
filterstats
merge
mergepairs
msa
otu
root
split
stats
tablebar
tablerare
tablestats
tabletotax
tobiom
tree
trim
micca
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Quality filtering strategy in micca
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Quality filtering strategy in micca
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v: 1.6.2
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