micca
1.6.2

Getting Started

  • Install
  • Run micca in 6 steps
  • Supported databases

Tutorials

  • Single-end sequencing
  • Paired-end sequencing
  • Import and analyze the data into R and phyloseq
  • Compute basic OTU table statistics, rarefy and summarize OTU tables by taxa using micca
  • Picking OTUs for use in PICRUSt

In Depth

  • Quality filtering strategy in micca
  • OTU picking in micca
  • Supported file formats
  • Changes

Command reference

  • classify
  • convert
  • filter
  • filterstats
  • merge
  • mergepairs
  • msa
  • otu
  • root
  • split
  • stats
  • tablebar
  • tablerare
  • tablestats
  • tabletotax
  • tobiom
  • tree
  • trim
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