usage: micca tablebar [-h] -i FILE -o FILE [-r] [-t N] [--xticklabelsize SIZE]
[-f {pgf,ps,svg,rgba,raw,svgz,pdf,eps,png}]
micca tablebar generates a relative abundance bar plot from
OTU or taxa tables. The table must be an OTU/taxon x sample,
TAB-separated file (see 'micca otu').
optional arguments:
-h, --help show this help message and exit
arguments:
-i FILE, --input FILE
input OTU table file (required).
-o FILE, --output FILE
output image file (required).
-r, --raw plot raw values (i.e. counts) instead of relative
abundances.
-t N, --topn N plot the top N abundant taxa (default 12).
--xticklabelsize SIZE
x tick label size (default 8).
-f {pgf,ps,svg,rgba,raw,svgz,pdf,eps,png}, --format {pgf,ps,svg,rgba,raw,svgz,pdf,eps,png}
output file format (default png).
Example
micca tablebar -i otutable.txt -o otutable_plot.png